So...I have two report tags reporting 15 analog inputs on a standard style report, outputing to a CSV file in a folder on a server. Custom preset at 1 second duration, and 1 minute end time. The report tags are triggered daily at 1:55pm, and 4:55am. The reports successfully generate but only with time/date information and analog input tag names...no values. Any ideas on where I might be going wrong?

I would change your tags to be analog status and configure logging with a deadband of 0 to start. When you've verified that the tags are historizing data correctly (have data) at the exact timestamp up the reports are running, you should have data on you reports.

As Michael noted, by default an Analog Input tag has no logger attached, you have to configure a separate tag to do that.

An Analog Status has a built-in logger.